论文标题

一种基于深度学习的方法,用于从定量计算机断层扫描图像中自动分割股骨近端股骨

A Deep Learning-Based Method for Automatic Segmentation of Proximal Femur from Quantitative Computed Tomography Images

论文作者

Zhao, Chen, Keyak, Joyce H., Tang, Jinshan, Kaneko, Tadashi S., Khosla, Sundeep, Amin, Shreyasee, Atkinson, Elizabeth J., Zhao, Lan-Juan, Serou, Michael J., Zhang, Chaoyang, Shen, Hui, Deng, Hong-Wen, Zhou, Weihua

论文摘要

目的:基于定量计算机断层扫描(QCT)的近端股骨图像分析提供了一种量化骨密度并评估骨质疏松症和骨折风险的方法。我们旨在开发一种基于深度学习的方法,用于自动股骨近端分割。方法和材料:我们开发了一种基于V-NET的3D图像分割方法(端到端完全卷积神经网络(CNN))自动提取股骨QCT图像。提出的V-NET方法论采用复合损失函数,其中包括骰子损失和L2正常化程序。我们进行了实验以评估所提出的分割方法的有效性。在实验中,使用了一个包括397个QCT受试者的QCT数据集。对于每个主题的QCT图像,股骨近端的基础真理是由训练有素的科学家描绘的。在整个队列的实验中,然后分别针对男性和女性受试者,将90%的受试者用于训练和内部验证的10倍交叉验证,并选择所提出模型的最佳参数;其余受试者用于评估模型的性能。结果:视觉比较表明,QCT图像的近端股骨部分的模型预测与地面真实轮廓之间的一致性很高。在整个队列中,提出的模型的骰子得分为0.9815,灵敏度为0.9852,特异性为0.9992。此外,当比较通过我们的模型预测与地面真相测量的体积时,获得了R2评分为0.9956(p <0.001)。结论:该方法显示了临床应用于QCT和基于QCT的有限元分析,用于评估骨质疏松症和髋部骨折风险。

Purpose: Proximal femur image analyses based on quantitative computed tomography (QCT) provide a method to quantify the bone density and evaluate osteoporosis and risk of fracture. We aim to develop a deep-learning-based method for automatic proximal femur segmentation. Methods and Materials: We developed a 3D image segmentation method based on V-Net, an end-to-end fully convolutional neural network (CNN), to extract the proximal femur QCT images automatically. The proposed V-net methodology adopts a compound loss function, which includes a Dice loss and a L2 regularizer. We performed experiments to evaluate the effectiveness of the proposed segmentation method. In the experiments, a QCT dataset which included 397 QCT subjects was used. For the QCT image of each subject, the ground truth for the proximal femur was delineated by a well-trained scientist. During the experiments for the entire cohort then for male and female subjects separately, 90% of the subjects were used in 10-fold cross-validation for training and internal validation, and to select the optimal parameters of the proposed models; the rest of the subjects were used to evaluate the performance of models. Results: Visual comparison demonstrated high agreement between the model prediction and ground truth contours of the proximal femur portion of the QCT images. In the entire cohort, the proposed model achieved a Dice score of 0.9815, a sensitivity of 0.9852 and a specificity of 0.9992. In addition, an R2 score of 0.9956 (p<0.001) was obtained when comparing the volumes measured by our model prediction with the ground truth. Conclusion: This method shows a great promise for clinical application to QCT and QCT-based finite element analysis of the proximal femur for evaluating osteoporosis and hip fracture risk.

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